We have developed a new tool for protein tertiary structure similarity which is much faster and accurate from previous tool Dali and MASASW. We submitted the paper and is under review for quite a time now :(
I request you guys to review this tool which can give results in real time and adds a new computational concept to the structure similarity of protein.
Also we are expanding our work in making a Scoring tool like SP-Align and TM-Score on prior work's basis. Please let us know how we can use this work for Phylogenic tree or anything else which can be helpful.
The tool is available here. Leave some advice or reviews ....
Thanks