Question: segmentation fault (core dumped) in IGBlast
1
gravatar for jellevandewege
4.5 years ago by
Netherlands
jellevandewege90 wrote:

I'm analyzing antibodies and I'm using IGBlastn standalone for it. I have created my own database using makeblastdb. When running it gives the error Segmentation fault (core dumped). Does anyone know how to fix this?

thanks

ADD COMMENTlink modified 4.5 years ago by mikhail.shugay3.3k • written 4.5 years ago by jellevandewege90
0
gravatar for mikhail.shugay
4.5 years ago by
mikhail.shugay3.3k
Czech Republic, Brno, CEITEC
mikhail.shugay3.3k wrote:

According to Blastn Segmentation Fault it appears that the query is too long/the number of queries is too large. A good idea would be to split data in several chunks. Please also check out this IgBlastWrapper, specially designed to handle antibody libraries

ADD COMMENTlink modified 4.3 years ago • written 4.5 years ago by mikhail.shugay3.3k
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