Question: get_homologues installation error: make: Nothing to be done for `all.
0
gravatar for fhsantanna
5.1 years ago by
fhsantanna440
Brazil
fhsantanna440 wrote:

Hi.

I am trying to use the software get_homologues in my Ubuntu 14.04 OS. However, when I try to install it, the following error occurs:

### 1) checking required parts: 


## checking mcl-02-063 (lib/phyTools: $ENV{'EXE_MCL'})

# compiling mcl-02-063 ...
loading cache ./config.cache
checking for a BSD compatible install... (cached) /usr/bin/install -c
checking whether build environment is sane... yes
checking whether make sets ${MAKE}... (cached) yes
checking for working aclocal... found
checking for working autoconf... found
checking for working automake... found
checking for working autoheader... found
checking for working makeinfo... found
checking for gcc... (cached) gcc
checking whether the C compiler (gcc  ) works... yes
checking whether the C compiler (gcc  ) is a cross-compiler... no
checking whether we are using GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for ranlib... (cached) ranlib
checking for main in -lm... (cached) yes
checking for main in -lpthread... (cached) yes
checking how to run the C preprocessor... (cached) gcc -E
checking for ANSI C header files... (cached) yes
checking for float.h... (cached) yes
checking for limits.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for working const... (cached) yes
checking for size_t... (cached) yes
checking for 8-bit clean memcmp... (cached) yes
checking for memset... (cached) yes
checking for pow... (cached) yes
checking for sqrt... (cached) yes
checking for strchr... (cached) yes
checking for strpbrk... (cached) yes
checking for strstr... (cached) yes
creating ./config.status
creating Makefile
creating intalg/Makefile
creating mcl/Makefile
creating nonema/Makefile
creating shcl/Makefile
creating shmcl/Makefile
creating shmcx/Makefile
creating shmx/Makefile
creating shmcx/Makefile
creating shtest/Makefile
creating util/Makefile
creating zoem/Makefile
creating doc/Makefile
creating graphs/Makefile
creating config.h
config.h is unchanged
make  all-recursive
make[1]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063'
Making all in intalg
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/intalg'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/intalg'
Making all in mcl
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/mcl'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/mcl'
Making all in nonema
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/nonema'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/nonema'
Making all in util
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/util'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/util'
Making all in shcl
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/shcl'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/shcl'
Making all in shmcl
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/shmcl'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/shmcl'
Making all in shmx
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/shmx'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/shmx'
Making all in shmcx
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/shmcx'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/shmcx'
Making all in shtest
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/shtest'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/shtest'
Making all in zoem
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/zoem'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/zoem'
Making all in doc
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/doc'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/doc'
Making all in graphs
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/graphs'
make[2]: Nothing to be done for `all.
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063/graphs'
make[2]: Entrando no diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063'
make[2]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063'
make[1]: Saindo do diretório `/home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063'
<< Cannot run /home/fernando/Área de Trabalho/get_homologues//bin/mcl-02-063/shmcl/mcl, please check the manual for compilation instructions and re-run.

How could I solve this installation problem?

Thank you.

ADD COMMENTlink modified 5.1 years ago by Pierre Lindenbaum124k • written 5.1 years ago by fhsantanna440

I fixed your link as it wasn't working because you added an extra character.

What command are you using when you install this?  sudo make?

Please give us some more information other than "this didn't work - help me".

ADD REPLYlink modified 5.1 years ago • written 5.1 years ago by Josh Herr5.7k
1
gravatar for Pierre Lindenbaum
5.1 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum124k wrote:

suggestions:

1) remove the whitespaces from  'Área de Trabalho' 

mv 'Área de Trabalho' area_de_trabalho

 

2) set /home/fernando/Área de Trabalho/get_homologues/bin/mcl-02-063' as executable

 

chmod +x mcl-02-063

 

3) install as root ??

ADD COMMENTlink written 5.1 years ago by Pierre Lindenbaum124k

Thanks, man. The problem was the extra space!

ADD REPLYlink written 5.1 years ago by fhsantanna440
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 922 users visited in the last hour