GroupByGene : error
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8.0 years ago
Rm 8.2k
instead of 

    ##INFO=<ID=EFF,Number=.,...

VCF I have has ....

##SnpEffVersion="3.6a (build 2014-04-24)....
##INFO=<ID=eff_ensembl_75,Number=.,
##INFO=<ID=eff_refseq,Number=.,....
##INFO=<ID=eff_knownGenes,Number=.,....

Exiting with : "no INFO[EFF] or no description "

ERROR: return status = -1

@Pierre is it possible to make GroupByGene more generalized to accommodate above

Groupbygene • 1.1k views
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No; group by gene was designed for SnpEff /VEP

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thanks, Workaround i re-annotated with standard Snpeff and reran groupbygene...

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