I'm not aware of any programs to automatically map metagenomic reads to a reference genome and then make a figure. You can do this by mapping your reads to your reference and then visualizing using many of the tools to do this (Tablet, Artemis, R packages). The figure you link to in your comment was probably generated by numerous tools and assembled in Illustrator or Inkscape.
As someone who works with metagenomic data, I would be very careful mapping metagenomic data to a reference. Is this a reference for a microbe in your sample that you have cultured and then sequenced a genome? What is your goal in doing this? (see Istvan's comment above -- what do you mean by recruitment plot in this context and what exactly are you looking to communicate?)