Thanks for the Answer. I will try pFst. Lositan is not practical solution for me provided that I have more then 2 million variant positions.
t,target -- argument: a zero based comma separated list of target individuals corrisponding to VCF columns
INFO: required: b,background -- argument: a zero based comma separated list of background individuals corrisponding to VCF columns
If I understood correct, that target means the individuals that we want to include in our analysis and background means not.
May I know how you are modelling it using PL or GL values for error correction and P-value calculation.
modified 4.8 years ago
4.8 years ago by
Anurag • 20