How to integrate SEED and BioCyc databases and change metabolites and reactions identifiers to BiGG?
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9.5 years ago
Miche • 0

Hi there,

I am pretty new to the field so please excuse my dumb questions.

I want to generate a genome scale model for a recently sequenced bug. Pathway Tools and The Seed Model (via RAST) gave me a fist draft.

How can I combine the two models in one with the information from the two?

But more importantly how can I change all the identifiers of this model to BiGG nomenclature?

After this I guess I will have to move into the pleasure of writing a biomass equation and gap filling.

Thanks for any help.

Best,
Miché

FBA automaticgenomescalemodelgeneration • 1.9k views
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