Satsuma output format to chain format
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6.5 years ago
iraun ★ 3.8k

Hi there,

I was wondering if there is tool for converting satsuma alignment output format to chain format.

Satsuma output:

  • Target sequence name
  • First target base
  • Last target base
  • Query sequence name
  • First query base
  • Last query base
  • Identity orientation

EXAMPLE:

chrX 5947 6164 chrX 9153 chrX 6270 6452 chrX 9472 9360 0.626728 + 9654 0.576923 +

Any help would be appreciated.

Thanks.

Satsuma MSA chain_format • 1.4k views
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I know this was a long time ago, but anyone got any thoughts? I'm hoping to do the same thing.

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