I have been focusing on structural rearrangements instead of SNPs or CNVs due to its effects on development of tumors and I selected several tools to detect structural rearrangements such as large insertions and deletion, inversion and translocations.
I had a handful of variants that is expected to be related to tumor developments (Actually my cancer sequencing data is specialized in specific sub-type cancer).
However, there is nothing to do even though I had a reliable structural variants. I want to need further analyzing my variants to get clinical information. I thought that there are many databases of SNPs and INDELs such as dbSNP and COSMIC but in contrast I can't see the specifically aimed databases of structural rearrangements.
Does anybody have their own process of analyzing structural rearrangements or know the databases which is specially aimed at rearrangements reports?