Entering edit mode
9.5 years ago
a.vipin.menon
•
0
Hi friends,
Is there a way to develop a PWM for dinucleotide sequence and trinucleotide sequence
I have coloumn of sequnces which has same string length that is approx 30 nt, I want to develop a method which would tell me the whether the di nucleotide is present in position 1 or not
as example
suppose
a = "(ATATAGCGCA","ATATATGGCC")
I need to know whether AT is present in position 1 or not ,like wise subsequent presence of dinucleotides and make a matrix out of them
it would be really great if you could help me
