I'm learning Lositan to find outliers from SNP. I think because my number of SNP (115740) exceed to the capability of Lositan, it stopped at the calculating step.
I think the Biopython version may revolve this problem, but I don't know how to execute your python script. Would anyone like give some instructions? or do you have any other idea to resolve the large data set?
All the best, Jianli