Entering edit mode
9.5 years ago
jingapril41
•
0
I am going to do some analysis on Illumina SNP data.
I am using illuminaio BioC pacakge to parse my .idat files and also the manifest file (.bpm) and then I will proceed to use DNAcopy to do the CNA analysis.
I am facing some problems when using the command readBPM()
. The readBPM()
function doesn't return chromosome and position that are needed for DNAcopy's CNA function.
Can someone help me? How and where could I get and extract the chromosome and position using readBPM()
function?
Thank you.
Regards,
jingxian