makeOrgPackageFromNCBI for S. pombe
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9.5 years ago
Parham ★ 1.6k

Hi,

I am practicing goseq and my organism is S. pombe. I have to provide the geneID-GOcategory relationship data to goseq. For that the manual says to use makeOrgPackageFromNCBI function as follow:

makeOrgPackageFromNCBI(version = "0.1", author = "Some One <so@someplace.org>", maintainer = "Some One <so@someplace.org>", outputDir = ".", tax_id = "XXXX", genus = "XXXX", species = "XXXX")

But I couldn't find the appropriate parameters on NCBI. Does anybody know where to look them up?

This is where I ended up: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=284812&lvl=3&lin=f&keep=1&srchmode=1&unlock

Thanks!

S.pombe goseq makeOrgPackageFromNCBI • 2.7k views
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I got some help here, but with errors!

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