Question: makeOrgPackageFromNCBI for S. pombe
0
gravatar for Parham
5.1 years ago by
Parham1.4k
Sweden
Parham1.4k wrote:

Hi,

I am practicing goseq and my organism is S. pombe. I have to provide the geneID-GOcategory relationship data to goseq. For that the manual says to use makeOrgPackageFromNCBI function as follow: 

makeOrgPackageFromNCBI(version = "0.1", author = "Some One <so@someplace.org>", maintainer = "Some One <so@someplace.org>", outputDir = ".", tax_id = "XXXX", genus = "XXXX", species = "XXXX")

But I couldn't find the appropriate parameters on NCBI. Does anybody know where to look them up?

This is where I ended up http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=284812&lvl=3&lin=f&keep=1&srchmode=1&unlock

Thanks!

 

 

ADD COMMENTlink written 5.1 years ago by Parham1.4k

I got some help here, but with errors!

ADD REPLYlink written 5.1 years ago by Parham1.4k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1038 users visited in the last hour