Question: makeOrgPackageFromNCBI for S. pombe
gravatar for Parham
5.1 years ago by
Parham1.4k wrote:


I am practicing goseq and my organism is S. pombe. I have to provide the geneID-GOcategory relationship data to goseq. For that the manual says to use makeOrgPackageFromNCBI function as follow: 

makeOrgPackageFromNCBI(version = "0.1", author = "Some One <>", maintainer = "Some One <>", outputDir = ".", tax_id = "XXXX", genus = "XXXX", species = "XXXX")

But I couldn't find the appropriate parameters on NCBI. Does anybody know where to look them up?

This is where I ended up




ADD COMMENTlink written 5.1 years ago by Parham1.4k

I got some help here, but with errors!

ADD REPLYlink written 5.1 years ago by Parham1.4k
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