I am working with GWAS. I am new with this thing.. I know some columns but I don't know what some columns are. Do you have any good link that explain what each column is? And how did we find those number? For example, what is X for? How did we found X? What's about GC score? and few those columns.
SNP Name Sample ID Allele1 - Top Allele2 - Top GC Score Sample Name Sample Group Sample Index SNP Index SNP Aux Allele1 - Forward Allele2 - Forward Allele1 - Design Allele2 - Design Allele1 - AB Allele2 - AB Allele1 - Plus Allele2 - Plus Chr Position GT Score Cluster Sep SNP ILMN Strand Customer Strand Top Genomic Sequence Plus/Minus Strand Theta R X Y X Raw Y Raw B Allele Freq Log R Ratio CNV Value CNV Confidence