Question: map cDNA position on genomic position
1
gravatar for User6891
4.5 years ago by
User6891250
Europe
User6891250 wrote:

Hi everyone,


I have a list of cDNA positions from mutations. Is there a tool with which I can convert this cDNA position to the genomic location?

Thanks in advance

sequencing mutation cdna genome • 5.3k views
ADD COMMENTlink modified 4.5 years ago by Denise - Open Targets4.9k • written 4.5 years ago by User6891250

Interesting question. I know how to get to genomic from protein muts, but not from cDNA. Following this post now.

ADD REPLYlink written 4.5 years ago by RamRS21k
1
gravatar for Denise - Open Targets
4.5 years ago by
UK, Hinxton, EMBL-EBI
Denise - Open Targets4.9k wrote:

Do you know the transcripts IDs these mutations were mapped to? If so, you may want to try the Ensembl REST API to covert the cDNA to genomic coordinates. If your list consist of mutations under the HGVS notations, you can also use the VEP. One of the results (among many others) of VEP will be the genomic location of those mutations.

ADD COMMENTlink written 4.5 years ago by Denise - Open Targets4.9k
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