Question: Multiple vcf files with plink
0
gravatar for ak221193
5.0 years ago by
ak22119310
Los Angeles, United States
ak22119310 wrote:

Hi,

I have multiple VCF files that are a result of variant calling on multiple members of a family. I was wondering how I can use these variant calling files along with a pedigree file for family based association using PLINK. How can I convert the VCFs into a suitable input file for PLINK.

 

Thank You.

 

plink family snps vcf • 2.1k views
ADD COMMENTlink modified 5.0 years ago by Jorge Amigo11k • written 5.0 years ago by ak22119310
1
gravatar for Jorge Amigo
5.0 years ago by
Jorge Amigo11k
Santiago de Compostela, Spain
Jorge Amigo11k wrote:

latest plink version 1.9 reads vcf files natively

ADD COMMENTlink written 5.0 years ago by Jorge Amigo11k
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