Multiple vcf files with plink

Question

[ak221193]

Hi,

I have multiple VCF files that are a result of variant calling on multiple members of a family. I was wondering how I can use these variant calling files along with a pedigree file for family based association using PLINK. How can I convert the VCFs into a suitable input file for PLINK.

Thank You.

Answer 1

[Jorge Amigo]

The latest plink version 1.9 reads vcf files natively