Multiple vcf files with plink
1
0
Entering edit mode
6.6 years ago
ak221193 ▴ 10

Hi,

I have multiple VCF files that are a result of variant calling on multiple members of a family. I was wondering how I can use these variant calling files along with a pedigree file for family based association using PLINK. How can I convert the VCFs into a suitable input file for PLINK.

Thank You.

vcf plink snps family • 2.8k views
ADD COMMENT
2
Entering edit mode
6.6 years ago

The latest plink version 1.9 reads vcf files natively

ADD COMMENT

Login before adding your answer.

Traffic: 1255 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6