Question: What is my RNA-seq data's library-type?!
0
gravatar for Parham
4.9 years ago by
Parham1.4k
Sweden
Parham1.4k wrote:

Hi,

I know it's a typical question but I couldn't figure it out reading forums and manual. So I have to set this library-type for TopHat but I don't know how to find what is my library-type! I just checked the accepted_hits.bam out of TopHat in IGV and Color aligned by read strand, here is an screenshot but I am not sure if it is telling anything regarding the library type! Any advise on this is appreciated. 

igv rna-seq library-type • 2.9k views
ADD COMMENTlink modified 4.9 years ago by Kamil1.9k • written 4.9 years ago by Parham1.4k
1
gravatar for Kamil
4.9 years ago by
Kamil1.9k
Boston
Kamil1.9k wrote:

Please see:

Related questions:

ADD COMMENTlink modified 4.9 years ago • written 4.9 years ago by Kamil1.9k

Thanks! So if my library is single-end does it mean that the library is unstranded?! 

ADD REPLYlink written 4.9 years ago by Parham1.4k
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