How can multi-allelic (more than two alleles) SNPs be dealt with in LD analysis? I have used Haploview and VCFtools and I know these SNPs are excluded from the analysis. Ideally I would like to include these SNPs. Are there ways to treat each as multiple SNPs with different combinations of the alleles, and are there tools or options that allow them to be included in the analysis?
Question: calculating LD for SNPs with more than two alleles
5.7 years ago by
Scott • 80
Scott • 80 wrote:
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