I want find out statistically significant pathway and gene ontology of miRNAs annotation of deep sequencing data.
I have annotated known and Novel miRNAs. Based on annotation, Is there any method to find significant pathways and GOs ?
One I know is GoElite by gladstone institute.
but with this i am not getting any significant GOs and Pathways.
If you have done significant biology analysis or heard about any tool please let me know.
for me, Gene Ontologies are that you always get something relative what you are looking for.
For miRNA, I would suggest you to try GOmir, its quite strong and trustable.