Hi Are there any de novo assemblers that will allow for variable length reads in one input file?
I have rna-seq transcriptome data and want remove adaptors (or parts of them) found in each read. The only way I can think of doing this is to remove the adaptors and write them back to a file. The problem is that there will be a range of read lengths in this file. I was hoping to avoid having to split this file into seperate files each containing same length reads. Hopefully this makes sense. Apologies for not explaining more clearly.