Quantitative trait Loci analysis of deep sequencing data (miRNAs)

Question

[mayurdivate]

Hello,

I want perform QTL analysis of miRNAs of plant samples.

I have no idea about it. If you have done such kind of analysis please share workflow.

I have genome and miRNAs and their coordinates on genome.

Is there any pre-processing of data? which are the best tools available ? Are there papers published using these papers?