So, I have a list of variants I want to annotate based off several databases in .bed format. The rest of the databases I want to include are off of ENCODE, but despite my searches I cannot for the love of my life download the data off ENCODE based off cell line.
I always end up at this page:
which provides me ALL the databases, but not by cell line. I found a search function here:
but for some reason, whenever I run a search, it doesn't return any results.
I am looking for .bed files listing sites of DNA methylation, DNase-seq, Chip seq (TFBS and histone modifications) for HepG2, K562, GM12878, and Human Skeletal Muscle cell lines each.
I am basically asking: How can I get these off ENCODE? Thanks.