The question about an output file of tangram-detect.
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Entering edit mode
9.5 years ago
okbys • 0

Hello,

I'm trying to analyze mobile element insertion sites by gkno fastq-tangram pipeline.

I would like to know the meaning of "INS:ME:PO" and "INS:ME:POLYA" in final vcf files. These were not into the header of vcf files.

> ##ALT=<ID=INS:ME:AL,Description="Insertion of ALU element">
> ##ALT=<ID=INS:ME:L1,Description="Insertion of L1 element">
> ##ALT=<ID=INS:ME:SV,Description="Insertion of SVA element">
> ##ALT=<ID=INS:ME:HE,Description="Insertion of HERVK element">

Regards

gkno tangram next-gen • 1.5k views
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