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• Methylation Analysis of NGS data generated by Roche GS Junior System
  Hi, has anybody experience in methylation analysis of data generated by Roche GS Junior system? I...
• vcf to bam
  If I have a .vcf file, how can I convert it to .bam file?
• How to generate .BED file from Partek GS using SNP6 copy number array data?
  Hi everyone Recently we did several of our cell lines for SNP6 affymetrix CNA. We want to visual...
• Converting Bam Or Sam Files Into Bed Files
  hi there, how can I convert bam or sam files into bed files? thanks so much for your help!!!! ...
• Can Bam File Be Converted To Fasta Format?
  Possible Duplicate: Convert bam file to fasta file Can we convert a whole human genome ...
• Convert Bam File To Fasta File
  How can I convert bam file to fasta file using Biopython command? please share if some one have a...
• Bam To Wig With Fixed Step?
  How can I convert a bam file to a wig fixedStep of step=1? I found this answer, but it creates a...
• Reducing filesize for homozygosity mapper
  Dear all, I wanted the homozygosity mapper tool for finding homozygous regions in two affected i...
• What Is The Alignment Identity Score And Alignment Difference Score In Gs Mapper/Newbler
  I am trying to understanding a couple of the settings in GS assembler, the alignment identity sco...
• randomly shuffle BAM file
  Is there a tool like bedtools shuffle which I can use to randomly shuffle a bam file? or will I h...
• Possible To Convert Bam To Bam?
  Is it possible to convert bam to bam? I have bam produced by default BWA; but I may also need bam...
• 10x genomics scRNA converting bam per cell
  I have scRNA seq data for three time points. I ran cell ranger pipeline that gives me one bam fil...
• Convert Bam To Bed/Fam/Bim
  Hi, I used Bedtools to convert BAM to BED format for my sequencing data. But together with BED I...
• BAM to CRAM to BAM
  I would like to know, can someone post a working example of converting a BAM file to CRAM and BAM...
• Converting PED/MAP files to BAM files
  Hello I have PED and MAP files that I want to convert to a BAM file. Is that possible?
• How to convert a genebank file to a gff file
  I have a .gb file from a bacterial genome and I would like to convert in an anotated .gff file. C...
• Problem In Converting Bam To Bed
  Hi, I have a question in converting bam to bed, while convert bam to bed and import them to IGV, ...
• How Can I Convert Bam To Sam?
  Any suggestions?
• Using Galaxy for fastq to .bam, and .bam to plink .bed
  Hello, Which galaxy tools can I use for fastq to .bam to make the alignment? Secondly, which gal...