Question: Is There A Way To Convert Gs Mapper Output To Bam File?
1
gravatar for Gabrielw
8.3 years ago by
Gabrielw60
Rio de Janeiro
Gabrielw60 wrote:

I'm trying to figure out if I can convert contigs fasta format generated by GS Mapper to bam file, can someone help me?

bam conversion sequencing • 1.8k views
ADD COMMENTlink modified 7.7 years ago by lexnederbragt1.2k • written 8.3 years ago by Gabrielw60
1
gravatar for lexnederbragt
8.3 years ago by
lexnederbragt1.2k
Oslo, Norway
lexnederbragt1.2k wrote:

Starting from newbler version 2.6, gsMapper can output BAM files (using the -bam option on the command line).

ADD COMMENTlink written 8.3 years ago by lexnederbragt1.2k
0
gravatar for Pierre Lindenbaum
8.3 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum124k wrote:

Googling your question returns a link to SeqAnswers.com : http://seqanswers.com/forums/showthread.php?t=2112

ADD COMMENTlink written 8.3 years ago by Pierre Lindenbaum124k
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