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• Poly(A) Tail In Rna-Seq Data
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• How to differentiate between prokaryotic and eukaryotic transcript from RNAseq data
  Hello everyone, I have a data of the insect (eukaryotic) tissue transcript data that has symbio...
• ncRNA, RNAseq, totalRNA, long ncRNA
  Hello all, my question is: can i analyze the expression of lncRNA and long lncRNA with total RN...
• Poly(A) Tail From Rna-Seq?
  Is it common to find poly(A) tail in RNA-Seq reads? And can this information be used to get bette...
• Single molecule RNA-seq, without poly(A) screening.
  Hi, I am trying to find datasets of single molecule RNA-seq data which includes both poly(A)+ an...
• How to better find and select the appropriate data set for my research?
  I am developing a database for single-copy genes. To test my methods and parameters I need some ...
• SRA data sets and runs
  Hi All, I am looking at this RNA-seq data [here][1]. I want to know which specific run do I need ...
• Are regular illumina poly(a) rna-seq data suitable to study polyadenylation sites?
  Hi all! I have a question about is there a particular requirement for RNA-seq to study poly(A) i...
• Find which transcription factors are regulated in a set of genes
  Hello Everyone, I have 6 RNA-seq data-sets, 2 tissues and 3 strains. I have the differentially e...
• Publicly available RNA-seq data of neurons from human
  Hi dear all, I have been recently searching for RNA-seq data of neurons that are primary cells fr...
• Paired End RIP-seq analysis with MACS2 reasonable parameters?
  Since some recent publications involving MACS2 as a valuable RIP-Seq (RNA not DNA) peak caller. I...
• How to find expression data-set derive from RNA-Seq experiments
  Where can I find open access expression data-sets derive from RNA-Seq experiments?
• Low gene count assignment for ribo-depleted RNA-Seq data?
  Until recently, we have used a poly(A) selection process to prepare our RNA-Seq libraries. In our...
• Remove poly-T from m6A RNA-seq using Smarter
  m6A RNA-seq using Smarter ,fastqc found many 'TTTTTTTTTTTTTTTTTTTTTTTTTTTTT' for the data QC,how ...
• How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequencing?
  Hi all, I'm working on RNA-seq analysis of a non-model plant, I got paired-read data derived fro...
• RNA-Seq in Bioconductor
  Hello, in which packages I can find data sets for RNA-Seq in edgeR, DESeq and others packages? ...
• Reasons for polyA in RNA Seq Reads
  In my poly A capture RNA sequencing fastq output, I noticed that about 20% of the reads contain p...
• the selection between legacy archive and harmonization in TCGA when compared to GTEx in the differential expression analysis
  I want to do a differential expression analysis between prostate cancer and normal tissue with th...
• test if clustering differs
  Hi, I have a dataset of 400 genes with gene expression data (RNA-seq) across 45 tissues. These g...