Question: Correlation between rows of Data frame
1
gravatar for adnanjaved1988
5.0 years ago by
Germany
adnanjaved198860 wrote:

Hey All I have data frame with 5 Samples A,B,C,D,E.  and what I want to do is firstly search for a mirna which is overall  highly correlated with the miRNA having the missing value and taking a  value derived from that mirna ..  for example 

 

miRNA-1 values: 1 2 3 NA 5
miRNA-2 values: 2 4 6 8 10
==> replace the missing value derived from the second miRNA by 4.

This is what I want to do for my data frame having 1620 rows...

Any help would be really appreciated :)

Best

Adnan 

                                        A        B         C         D
hsa-miR-199a-3p, hsa-miR-199b-3p         NA 13.13892  5.533703  25.67405
hsa-miR-365a-3p, hsa-miR-365b-3p   15.70536 52.86558 18.467540 223.51424
hsa-miR-3689a-5p, hsa-miR-3689b-5p       NA 21.41597  5.964772        NA
hsa-miR-3689b-3p, hsa-miR-3689c     9.58696 44.56490 10.102051  13.26785
hsa-miR-4520a-5p, hsa-miR-4520b-5p 18.06865 28.06991        NA        NA
hsa-miR-516b-3p, hsa-miR-516a-3p         NA 10.77471  8.039662        NA
                                          E      
hsa-miR-199a-3p, hsa-miR-199b-3p         NA
hsa-miR-365a-3p, hsa-miR-365b-3p   31.93503
hsa-miR-3689a-5p, hsa-miR-3689b-5p 24.26073
hsa-miR-3689b-3p, hsa-miR-3689c          NA
hsa-miR-4520a-5p, hsa-miR-4520b-5p       NA
hsa-miR-516b-3p, hsa-miR-516a-3p         NA
R • 1.5k views
ADD COMMENTlink modified 5.0 years ago • written 5.0 years ago by adnanjaved198860
1
gravatar for raunakms
5.0 years ago by
raunakms1.1k
Vancouver, BC, Canada
raunakms1.1k wrote:

There are many different methods available for data imputation in high-throughput experiments.

http://bib.oxfordjournals.org/content/11/2/253.short

 

ADD COMMENTlink written 5.0 years ago by raunakms1.1k
0
gravatar for adnanjaved1988
5.0 years ago by
Germany
adnanjaved198860 wrote:

Hey Thanks ...:)

But I am already willing to know how to deal the method which I mentioned. This is one of the good methods in my case where I have micro array data and this Data has NA values... 

ADD COMMENTlink written 5.0 years ago by adnanjaved198860
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