How to download all plant noncoding RNAs (snRNA, rRNA, snoRNA, tRNA) from NCBI web page
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6.4 years ago
zulk ▴ 30

Dear users

How can I all download plant noncoding RNAs (snRNA, rRNA, snoRNA, tRNA) from NCBI web page. is that true? "Viridiplantae"[Organism] or rrna[filter] or trna[filter] or snrna[filter] or snorna[filter] 
linkhttp://www.ncbi.nlm.nih.gov/nuccore/?term=%22Viridiplantae%22%5BOrganism%5D+or+rrna%5Bfilter%5D+or+trna%5Bfilter%5D+or+snrna%5Bfilter%5D+or+snorna%5Bfilter%5D

thanks in advance

rna-seq non-coding RNA NCBI custom data • 4.8k views
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Entering edit mode
6.4 years ago

Maybe you want:

http://www.ncbi.nlm.nih.gov/nuccore/?term=%22Viridiplantae%22[Organism]+and+%28rrna[filter]+or+trna[filter]+or+snrna[filter]+or+snorna[filter]%29

(I.e. "AND" after Viridiplantae instead of OR).

Then choose "send to" -> "File" -> "Format" (choose your favorite format)

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I think this is true  (biomol_rrna[PROP] OR biomol_snrna[PROP] OR biomol_snorna[PROP] OR biomol_trna[PROP]) AND ("Viridiplantae"[Organism]) 

http://www.ncbi.nlm.nih.gov/nuccore/?term=(biomol_rrna%5BPROP%5D+OR+biomol_snrna%5BPROP%5D+OR+biomol_snorna%5BPROP%5D+OR+biomol_trna%5BPROP%5D)+AND+(%22Viridiplantae%22%5BOrganism%5D)

All (1541)
rRNA (1302)
snoRNA (108)
snRNA (11)
tRNA (120)

what do you think dariober?

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