Finding simple sequence repeat (SSR) on differentially expressed RNA-seq reads
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7.1 years ago
seta ★ 1.5k

Hi everybody,

I found differentially expressed genes and miRNA derived from Illumina mRNA-seq and miRNA-seq experiments, respectively. Now, I would like to find simple sequence repeat (SSR) on these differentially expressed reads. Is there anybody with such experience, please let me know how I can do this task. Any comment and idea is welcomed and greatly appreciated. 

RNA-Seq SSR • 2.5k views
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7.1 years ago
Renesh ★ 2.0k

Use this tool:http://pgrc.ipk-gatersleben.de/misa/

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