I was just curious to know how many tools are available that can help in annotating the vcf files or say any format that can be extracted from the vcf files.
The ones that I know, include:
I am more interested in knowing tools that are similar to CHASM & CRAVAT (Cancer related SNPs). But, that does not mean you cannot suggest others.
Please indicate your favorite tool for extracting most/potentially biologically relevant SNPs.