Does anybody have recommended Java or Scala library for writing BigWig / BedGraph files?
I am aware that there is a Java bigwig library that was developed by the IGV team. However, it seems to only provide BigWig / BedGraph reading functions; nothing on writing. After contacting the developers I was told that the library will not be further developed.
I am also aware that there are ways to make Java work with the C library (there are ways to make Java work with the C library). What I am looking for, however, is a pure Java (preferrably Scala) library.
This feels like like something that could have been used by a number of people out there. So before I even attempt to reinvent the wheel, I feel like I should ask :).