Hi dear community,
I am using Kinefold software from the command line to get the folding prediction for a RNA molecule. I need to parse that output (the sequence of structure, with symbols [UCAU]AAGA[CCGAGC] etc) to a structure in Vienna Format (with brackets and points). I am not allowing pseudoknots.
Could anybody tell me if there is any script or anything to parse the Kinefold format to Vienna Package?
Thanks in advance