Question: Parse RNA structure from Kinefold to RNA VIenna Package (RNAfold)
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gravatar for peter pfand
4.4 years ago by
peter pfand80
Germany
peter pfand80 wrote:

Hi dear community,

I am using Kinefold software from the command line to get the folding prediction for a RNA molecule. I need to parse that output (the sequence of structure, with symbols [UCAU]AAGA[CCGAGC] etc) to a structure in Vienna Format (with brackets and points). I am not allowing pseudoknots.

Could anybody tell me if there is any script or anything to parse the Kinefold format to Vienna Package?

Thanks in advance

ADD COMMENTlink modified 4.4 years ago • written 4.4 years ago by peter pfand80
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