I genotyped a sample by Illumina SNP array and I sequenced its exome sequencing data. What is the sensitivity of genotype calling from sequencing data? Is there already perl script?
So which one is more accurate - genotyping or sequencing?
You might want to look at these two tools:
Many thanks. I will have a try.
But I do not found how to download VariantEval, I think it will be fit for me.
VariantEval is part of GATK. You will need to download the GATK software.