Question: Phylop Mean Score
0
gravatar for Abdel
9.2 years ago by
Abdel150
Montreal
Abdel150 wrote:

Hi folks

I m trying to find a way to get the phyloP score for a given physical position , i tried to query the ucsc sql phyloP46wayPlacental table , but i realized that the score I'm looking after is not present in the table .

If anybody have an idea of how to get the mean score , let me know please . Ps : I'm not interested in downloading all the .wig files to get the phyloP score

Here is the table schema :

bin , chrom ,chromStart ,chromEnd, name , span ,count ,offset , file ,lowerlimit ,dataRange ,validCount ,sumData ,sumSquares
ucsc • 3.5k views
ADD COMMENTlink modified 6.5 years ago by Biostar ♦♦ 20 • written 9.2 years ago by Abdel150

While you may not be interested in downloading the wig files, from working with them myself, I suspect this is what you will have to do.

ADD REPLYlink written 6.5 years ago by Alex Reynolds31k
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