Question: Comparing top SNPs in GWAS
0
gravatar for Varun
4.4 years ago by
Varun30
United Kingdom
Varun30 wrote:

Hello,

 

I have the summary data from two genome wide association studies of related traits. I want to compare the two gwas, to find if there is an enrichment of SNPs below a certain P-value form GWAS 1 in GWAS 2. Does anyone know of any software or paper to go about this? I get the feeling that I'm looking for a hypergeometric test of some sort. 

 

Any help will be greatly appreciated.

 

Thanks,

V

genome • 1.6k views
ADD COMMENTlink modified 23 months ago by A. Blizzard0 • written 4.4 years ago by Varun30

Hi there, did you ever find a way to compare (or assess the difference) two sets of GWAS p-values?

ADD REPLYlink written 23 months ago by A. Blizzard0
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