Does anyone know how to include two datasets in locuszoom ? Something like this Plots ? On the locuzoom documentation for the standalone program, it doesn't really tell you how to go about two datasets ? The command I am trying to use is
locuszoom --metal file fineMap=GWASeQTL--markercol SNP --pvalcol P --delim tab --refgene Gene1 --flank 500kb --pop EUR --build hg19 --source 1000G_March2012
where, "file" looks like this
SNP P SNP1 0.1 SNP1 0.3 SNP2 0.2 SNP3 0.25
and GWASeQTL looks like this
snp chr pos pp group color SNP1 1 1000 0.1 eQTL red SNP1 1 1000 0.3 GWAS blue SNP2 12 1153 0.2 eQTL red
Anyone does this before?