Question: Qualimap insert size result explanation
3.2 years ago by
geek_y ♦ 8.2k
geek_y ♦ 8.2k wrote:
Zero insert size means :
1. mate unmapped. (or)
2. Multi mapped read. (or)
3. Mate mapped to different 'Chr/scaffold/contig'
And may be others, but its good to look at the flag (column 2) and check whats happening.
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