Question: Qualimap insert size result explanation
4.2 years ago by
geek_y ♦ 9.1k
geek_y ♦ 9.1k wrote:
Zero insert size means :
1. mate unmapped. (or)
2. Multi mapped read. (or)
3. Mate mapped to different 'Chr/scaffold/contig'
And may be others, but its good to look at the flag (column 2) and check whats happening.
ADD COMMENT • link
Please log in to add an answer.
Powered by Biostar version 2.3.0
Traffic: 1948 users visited in the last hour