Question: Functional Genes x Pseudogenes
0
gravatar for RafaelMP
4.9 years ago by
RafaelMP110
Brazil
RafaelMP110 wrote:

Hi All,

I am working with evolution of proteins in the human genome and I wanna know if is possible to obtain a list of all pseudogenes (human and non-human) with relationship with human genes.
I did a test with gencode data (release 21), however there is only information about genes and pseudogenes in the human genome.

What could I do?

Thank you!

ADD COMMENTlink modified 4.9 years ago by Siva1.6k • written 4.9 years ago by RafaelMP110

GENCODE 21 contains data for human only, so it's not surprising you got info on genes and pseudogenes in the human genome only. There is GENCODE M3 for mouse. Both will have pseudogene annotation. 

ADD REPLYlink written 4.9 years ago by Denise - Open Targets5.0k
1
gravatar for Siva
4.9 years ago by
Siva1.6k
United States
Siva1.6k wrote:

Have you checked the pseudogene database from Mark Gerstein's group? It has ortholog information for human, worm and fly genes and pseudogenes.

Relevant publication:

Comparative analysis of pseudogenes across three phyla.

ADD COMMENTlink written 4.9 years ago by Siva1.6k
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