Histogram Of Peptides
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12.6 years ago
Lavanya ▴ 10

Hi All

I wish to analyse a sequence by dipeptides and create a histogram out of it. can anyone tell how to perform this?

from lavanya

sequence • 2.0k views
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12.6 years ago
Chris ▴ 190

Grab your favorite programming language, iterate over each sequence position and raise a counter for the specifc dipeptide that you encouter. Hint: dictionaries/hashes are quite handy in such scenarios. Hint2: If you provide more input in your question, the more specific a possible answer gets. I.e. what are your programming skills, what have you done so far to come to a solution (sounds like a homework to me..), what constitutes a dipeptide for you (overlapping/non-overlapping)?

Chris

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hahahaha +1 for the homework :-P

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12.6 years ago
Woa ★ 2.9k

To calculate the numbers of different dipeptides check this thread

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