Question: Finding Human/Yeast Orthologs Using Embl?
4
gravatar for Blizclaw
8.2 years ago by
Blizclaw40
Blizclaw40 wrote:

Hi, I am new at using EMBL and I need to find orthologues between the genes of chromosome 7 of Saccharomyces cerevisiae and humans. I have a feeling it can be done with Ensembl, but I am not quite sure how to go about doing it. Any tips?

Thanks!

orthologues • 6.4k views
ADD COMMENTlink written 8.2 years ago by Blizclaw40
3
gravatar for Casey Bergman
8.2 years ago by
Casey Bergman18k
Athens, GA, USA
Casey Bergman18k wrote:

Try doing this using BioMart by adapting the following protocol: http://www.ensembl.info/blog/2009/01/21/how-to-get-all-the-orthologous-genes-between-two-species/

ADD COMMENTlink modified 7 weeks ago by RamRS24k • written 8.2 years ago by Casey Bergman18k
1
gravatar for Khader Shameer
8.2 years ago by
Manhattan, NY
Khader Shameer18k wrote:

You may also check: Ensembl Compara for finding human-yeast orthologs.

ADD COMMENTlink written 8.2 years ago by Khader Shameer18k
1
gravatar for Rama
8.2 years ago by
Rama40
United States
Rama40 wrote:

Hi,

You can use YeatMine at Saccharomyces Genome Database to find homologs.You have to build a query to find the homologs. Send an email to sgd-helpdesk@lists.stanford.edu if you encounter problems. http://yeastmine.yeastgenome.org/yeastmine/begin.do

R

ADD COMMENTlink written 8.2 years ago by Rama40
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