Hi all :)
Does Protein ( Amino acid ) sequences have ( Simple Sequence Repeats ) SSR's in their contents ?
I'm wondering if I can extract SSR's from them ...
I'm working on a research that requires the extraction of SSR's info as a preprocessing step , and that works fine with me on cDNA sequences using SciRoKo tool ( http://kofler.or.at/bioinformatics/SciRoKo/ ) , which gives a fairly well structured output format that is easy to be accessed and analyzed by a source code pipeline , as shown in the attached picture .
But when I attempted to use it with amino acid sequences it throws an exception complaining about the unrecognized contents of the file !!
I did some search and found this : ( http://22.214.171.124/IMEX/index.html ) .. I've never used it before , is it good enough to accomplish this task ?
I prefer to stick with the SciRoKo tool - for consistency and integration purposes - if anyone can help me to handle that exception ... if NOT , is there any other tools recommended to achieve this task ?
Thanks to all who will help .