I'm working on a metagenomics project, and we'd like to be able to query the top species hits against some resource that would provide at least a True/False human pathogenicity association. Even better would be a scoring metric of some sort. I've seen a few web databases, but none of them fit the requirements of providing a programmatically-accessible pathogenicity value. PhiBase might be a good fit, but it's currently down.
Even if I need to download and run the database locally, or build something from one or more flat files, I'm totally fine with it. I'm just looking for some starting point at the moment.