Question: mmdiff RNAseq output
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gravatar for R
4.3 years ago by
R10
....
R10 wrote:

Hi,

I have a question regarding mmdiff output!

  1. feature_id: the name of the feature (e.g. Ensembl transcript ID)
  2. bayes_factor: the Bayes factor in favour of the second model
  3. posterior_probability: the posterior probability in favour of the second model (the prior probability is recorded in a # comment at the top of the file)
  4. alpha0 and alpha1: estimated posterior mean of the global intercept for each model
  5. beta0_0, beta0_1..., beta1_0, beta1_0: estimated posterior means of the regression coefficients of the model-independent covariate matrix M under each model
  6. eta0_0, eta0_1..., eta1_0, eta1_1...: estimated posterior means of the regression coefficients of the model-dependent matrix P under each model
  7. mu_sample1, mu_sample2,... sd_sample1, sd_sample2,...: the data, i.e. the posterior means and standard deviations used as the outcomes

If I want to compare 2 samples, how should I put a cutoff? (i.e. on which column(s))

Thank you very much

rna-seq • 1.1k views
ADD COMMENTlink modified 4.3 years ago • written 4.3 years ago by R10
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