Question: How to generate a smoothing plot for Fst along the genome from Lositan output?
gravatar for Anurag
4.9 years ago by
Anurag20 wrote:

Hi All,

I want to make a genome wide Fst plot using the Lositan output along with P-Values calculated by lositan.

Any inputs will be appreciated.


lositan snp fst • 2.3k views
ADD COMMENTlink modified 4.7 years ago by Zev.Kronenberg11k • written 4.9 years ago by Anurag20
gravatar for Zev.Kronenberg
4.7 years ago by
United States
Zev.Kronenberg11k wrote:

I don't know how to do it from Lositan, but I have all the details how to do it using my code:

Check out the library, run wcFst:

smooth it:

ADD COMMENTlink written 4.7 years ago by Zev.Kronenberg11k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1894 users visited in the last hour