Question: Question about gene ontology annotation: When analysing DE genes do we look for all DE or we separate over and under expression?
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gravatar for tiago211287
5.6 years ago by
tiago2112871.2k
USA
tiago2112871.2k wrote:

I started doing gene ontology analysis and a doubt that came out was if I must look for the functional categories for over and under expressed genes separeted or together. I am trying to visuIize in cluego but I dont know if I can use the expression data in the network graph. Someone have some guidance for me ?

gene ontology annotation • 1.6k views
ADD COMMENTlink modified 5.6 years ago by Woa2.8k • written 5.6 years ago by tiago2112871.2k
2
gravatar for Woa
5.6 years ago by
Woa2.8k
United States
Woa2.8k wrote:

Check this thread:
"Separate enrichment analysis of pathways for up- and downregulated genes"

ADD COMMENTlink written 5.6 years ago by Woa2.8k

Thank you very much. This discussion will help me.

ADD REPLYlink written 5.6 years ago by tiago2112871.2k
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