Question: Where to find Online RBS-finder?
1
gravatar for bennuttall
4.5 years ago by
bennuttall10
United Kingdom
bennuttall10 wrote:

I would like to identify the ribosome binding site (RBS) for a particular gene within a prokaryotic operon. I have read on various sites that a Perl program, RBS-finder, exists and is now incorporated into the GLIMMER gene prediction tool. However I cannot find a link to the standalone online version of RBS-finder. Can anyone point me in the right direction to this program or another RBS-finder? 

Thanks in advance! 

 

genome • 5.7k views
ADD COMMENTlink modified 2.9 years ago by deprekate0 • written 4.5 years ago by bennuttall10
0
gravatar for rutial
3.5 years ago by
rutial40
Israel
rutial40 wrote:

You can use Genome Compiler for that - they have embedded the RBS calculator by Prof. Howard Salis

ADD COMMENTlink written 3.5 years ago by rutial40
0
gravatar for deprekate
2.9 years ago by
deprekate0
deprekate0 wrote:

I have been looking for the program as well. It is odd that it has almost been completly scrubbed from the internet. I did manage to find the older 1.0 version though.

https://github.com/sgivan/BGA/blob/marvelous/bin/rbs_finder.pl

ADD COMMENTlink written 2.9 years ago by deprekate0
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