BINGO plugin in cytoscape giving empty output
1
1
Entering edit mode
6.3 years ago
tiago211287 ★ 1.3k

Iam trying to use the Bingo Plugin in cytoscape but, the output are empty and I can not figure out why. Can you guys give me some enlightment? Here is a ss of my input.

 

More one question: is 'Reference set' the background of genes?

 

Thank you guys.

 

Bingo cytoscape • 1.8k views
ADD COMMENT
3
Entering edit mode
6.3 years ago
Woa ★ 2.8k

I've not used it for a while, but be sure your Identifiers(Ensemble I guess in this case) can be mapped to the ontology files. It is better to update the ontology and annotation files in Bingo before using it. 

ADD COMMENT
0
Entering edit mode

Thanks woa, you were right, the major problem was the ensemble Id's. I converted to official gene symbol and it worked.

ADD REPLY

Login before adding your answer.

Traffic: 2063 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6