I am new for this field. Recently I did differential analysis experiment. I used DEseq and at the end I got gene names which are differentially expressed in different tissues. because the list is big with number of transcripts, I would like to extract all the transcript sequences in fasta format using gft (or gff3) file and genome scaffold file. This is not a model organism. and I have made this gtf file using scipio program.
can somebody please help me
Thank you in advance