Mantel Test, Arlequin..And How To Make Input Files
1
0
Entering edit mode
10.1 years ago
User 7433 ▴ 160

hello everyone,

Has anyone here used Arlequin to conduct a Mantel test? Or any other software to do so?

I have pairwise Fsts for 19 populations. This has been done for the exons and introns of my genes.

I want to see if there if there is a correlation between the pairwise fsts of the introns and those of the exons...having looked into it..I think the Mantel test is best for this.

But how do I do it? I don't know what software is best - I have Arlequin and I am aware it conducts Mantel tests but I have not got a clue how to input the data..

Do I input one big matrix that contains the data for both the introns and exons?

many thanks!

test correlation • 6.7k views
ADD COMMENT
0
Entering edit mode
9.9 years ago
I Molnar ▴ 10

How can I make the input file for Mantel test in Arlequin program. I have 5 locuses in 3 patient groups. I have working input file (standard data, genotypic data, recessive allele:00, haloploid format) for the other evaluation in Arlequin (AMOVA, allele frekvency, linkage disequi.)

ADD COMMENT

Login before adding your answer.

Traffic: 2731 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6