Has anyone here used Arlequin to conduct a Mantel test? Or any other software to do so?
I have pairwise Fsts for 19 populations. This has been done for the exons and introns of my genes.
I want to see if there if there is a correlation between the pairwise fsts of the introns and those of the exons...having looked into it..I think the Mantel test is best for this.
But how do I do it? I don't know what software is best - I have Arlequin and I am aware it conducts Mantel tests but I have not got a clue how to input the data..
Do I input one big matrix that contains the data for both the introns and exons?