Question: mirdeep2: error
gravatar for galina_ananina
4.0 years ago by
galina_ananina20 wrote:

I wonder if somebody knows how many different (not concatenated) samples can be analyzed with module of mirdeep2 package. I have some troubles to analyze more than 2 samples. After preparing reads_collapsed.fa (-m option to collapse reads applied) e reads_vs_genome.arf applying config-file e module for 12 samples, I've got an error running repeated sequencies in the reads_collapsed.fa.

The sequence
occures at least twice in sample XXX in your reads file

Why does it happen? Did the collapsing failed?

next-gen software error • 1.6k views
ADD COMMENTlink written 4.0 years ago by galina_ananina20

Have you solved this problem?

ADD REPLYlink written 20 months ago by fana0
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