Dear All!I have a fastq experiment with some tandem duplication on a gene. I expet to have 30 50 bp of insertion .
.pindel -T 15 -f hg19_primary.fa -i prova.txt -c chr19 -o sample
After I run picar I have a insert size of 242 as average and I use that information for run on pindel.
Unfortunately the duplication are empity:
I have this files :
0 Dec 11 11:15 samplepositive_TD
what is RP? Any suggestion to help to detect the duplication?
thanks in advance!