Question: pindel _RP and duplictation problem
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gravatar for jack1
2.8 years ago by
jack10
Italy
jack10 wrote:

Dear All!I have a fastq experiment with some tandem duplication on a gene. I expet to have 30 50 bp of insertion .

 

.pindel  -T 15 -f hg19_primary.fa  -i prova.txt  -c chr19 -o sample

After I run picar I have a insert size of 242 as average  and I use that information for run on pindel.

Unfortunately the duplication are empity:

I have this files :

0 Dec 11 11:15 samplepositive_TD
_LI
_CloseEndMapped
_BP
_INT
_INV
_D
_SI
_RP

 

what is RP? Any suggestion to help to detect the duplication?

thanks in advance!

 

 

 

 

pindel • 760 views
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