pindel _RP and duplictation problem
0
1
Entering edit mode
7.1 years ago
jack1 ▴ 10

Dear All!I have a fastq experiment with some tandem duplication on a gene. I expet to have 30 50 bp of insertion .

 

.pindel  -T 15 -f hg19_primary.fa  -i prova.txt  -c chr19 -o sample

After I run picar I have a insert size of 242 as average  and I use that information for run on pindel.

Unfortunately the duplication are empity:

I have this files :

0 Dec 11 11:15 samplepositive_TD
_LI
_CloseEndMapped
_BP
_INT
_INV
_D
_SI
_RP

 

what is RP? Any suggestion to help to detect the duplication?

thanks in advance!

 

 

 

 

pindel • 1.7k views
ADD COMMENT

Login before adding your answer.

Traffic: 3248 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6