Question: pindel _RP and duplictation problem
gravatar for jack1
3.5 years ago by
jack10 wrote:

Dear All!I have a fastq experiment with some tandem duplication on a gene. I expet to have 30 50 bp of insertion .


.pindel  -T 15 -f hg19_primary.fa  -i prova.txt  -c chr19 -o sample

After I run picar I have a insert size of 242 as average  and I use that information for run on pindel.

Unfortunately the duplication are empity:

I have this files :

0 Dec 11 11:15 samplepositive_TD


what is RP? Any suggestion to help to detect the duplication?

thanks in advance!





pindel • 978 views
ADD COMMENTlink written 3.5 years ago by jack10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 915 users visited in the last hour